| Title | Season Episode | Airdate | Stardate | Year | Rating | |
| The Xindi | 3 x 01 | 53 | 10 Sep 2003 | Unknown | 2153 |  |
| Anomaly | 3 x 02 | 54 | 17 Sep 2003 | Unknown | 2153 |  |
| Extinction | 3 x 03 | 55 | 24 Sep 2003 | Unknown | 2153 | |
| Rajiin | 3 x 04 | 56 | 1 Oct 2003 | Unknown | 2153 | |
| Impulse | 3 x 05 | 57 | 8 Oct 2003 | Unknown | 2153 | |
| Exile | 3 x 06 | 58 | 15 Oct 2003 | Unknown | 2153 | |
| Twilight | 3 x 08 | 60 | 5 Nov 2003 | Unknown | 2153 |  |
| The Shipment | 3 x 07 | 59 | 29 Oct 2003 | Unknown | 2153 | |
| North Star | 3 x 09 | 61 | 12 Nov 2003 | Unknown | 2153 | |
| Similitude | 3 x 10 | 62 | 19 Nov 2003 | Unknown | 2153 | |
| Carpenter Street | 3 x 11 | 63 | 26 Nov 2003 | Unknown | 2153 | |
| Chosen Realm | 3 x 12 | 64 | 14 Jan 2004 | Unknown | 2153 | |
| Proving Ground | 3 x 13 | 65 | 21 Jan 2004 | 6-Dec-53 | 2153 |  |
| Stratagem | 3 x 14 | 66 | 4 Feb 2004 | Unknown | 2153 | |
| Harbinger | 3 x 15 | 67 | 11 Feb 2004 | 27 Dec 2153 | 2153 | |
| Doctor's Orders | 3 x 16 | 68 | 18 Feb 2004 | Unknown | 2154 | |
| Hatchery | 3 x 17 | 69 | 25 Feb 2004 | 8 Jan 2154 | 2154 | |
| Azati Prime | 3 x 18 | 70 | 3 Mar 2004 | Unknown | 2154 | |
| Damage | 3 x 19 | 71 | 21 Apr 2004 | Unknown | 2154 | |
| The Forgotten | 3 x 20 | 72 | 28 Apr 2004 | Unknown | 2154 | |
| E2 | 3 x 21 | 73 | 5 May 2004 | Unknown | 2154 | |
| The Council | 3 x 22 | 74 | 12 May 2004 | 13 Feb 2154 | 2154 | |
| Countdown | 3 x 23 | 75 | 19 May 2004 | Unknown | 2154 | |
| Zero Hour | 3 x 24 | 76 | 26 May 2004 | 14 Feb 2154 | 2154 | |
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